Skip to main content
Simulating Sequence Data for Pedigrees
Family-based studies have more power to detect rare variants, require smaller sample sizes, and can more accurately detect sequencing errors than case-control studies. However, data collection for these studies is both time consuming and expensive. Furthermore, we are unsure how existing methods to identify causal rare variants will perform for family-based studies of diseases with a sporadic component. To address these concerns, we expand on previous work on SimRVPedigree, an R package to simulate pedigrees ascertained for multiple disease-affected relatives, and demonstrate how it may be used with a coalescent simulator to simulate sequence data for these pedigrees. Time permitting, we will compare the performance of selected rare-variant methods to identify causal variants in sampled pedigrees.
Date and Time
-
Additional Authors and Speakers (not including you)
Jinko Graham
Simon Fraser University
Language of Oral Presentation
English
Language of Visual Aids
English

Speaker

Edit Name Primary Affiliation
Christina Nieuwoudt Simon Fraser University